Publications

Alhasson, F. et al. Altered gut microbiome in a mouse model of Gulf War Illness causes neuroinflammation and intestinal injury via leaky gut and TLR4 activation. PLoS One 12, e0172914 (2017).

Mark Ibekwe, A., Murinda, S. E., Murry, M. A., Schwartz, G. & Lundquist, T. Microbial community structures in high rate algae ponds for bioconversion of agricultural wastes from livestock industry for feed production. Sci. Total Environ. 580, 1185–1196 (2017).

Iwai, S. et al. Piphillin: Improved prediction of metagenomic content by direct inference from human microbiomes. PLoS One 11, 1–18 (2016).

Mohan, M. et al. Dietary gluten-induced gut dysbiosis is accompanied by selective upregulation of microRNAs with intestinal tight junction and bacteria-binding motifs in rhesus macaque model of celiac disease. Nutrients 8, 684 (2016).

Mandalari, G., Chessa, S., Bisignano, C., Chan, L. & Carughi, A. The effect of sun-dried raisins (Vitis vinifera L.) on the in vitro composition of the gut microbiota. Food Funct. 7, 4048–4060 (2016).

Upadhyaya, B. et al. Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions. Sci. Rep. 6, 28797 (2016).

Deshpande, A. et al. Effect of Fidaxomicin versus Vancomycin on Susceptibility to Intestinal Colonization with Vancomycin-Resistant Enterococci and Klebsiella pneumoniae in Mice. Antimicrob. Agents Chemother. 60, 3988–3993 (2016).

Callahan, B. J. et al. DADA2: High-resolution sample inference from Illumina amplicon data. Nat. Methods 13, 581–583 (2016).

Acosta, A. et al. Effects of Rifaximin on Transit, Permeability, Fecal Microbiome, and Organic Acid Excretion in Irritable Bowel Syndrome. Clin. Transl. Gastroenterol. 7, e173 (2016).

Fourie, N. H. et al. The microbiome of the oral mucosa in irritable bowel syndrome. Gut Microbes 7, 286–301 (2016).